Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015933702.1_cds_XP_016479901.1_71400
CDS Infomation

[gene=LOC107801134] [db_xref=GeneID:107801134] [protein=protein SHORT-ROOT-like] [protein_id=XP_016479901.1] [location=complement(27736..29280)] [gbkey=CDS]
Sequence

ATGGATACTTTGTTTAGATTAGTTAATCTTCAACAACAACAACAACAATCTGATCAATCC
TTTAACTCCAGTAGAACTTCAAGCAGCTCTCGATCTTCTAATAAACAAAATACCTACACT
ACTTACAATTACCCTTCTCATCATAATCAAGAAGACGAAGAATGCTTCAACTTTTTCATG
GATGAAGATGACTTCTCTTCTAATTCCTCTTCTAAACACAACAACTACCCTCCTCCTTAT
CATTACCAACACCACCACCAACAACAACAATTTTCCAACACTCCTACACCGACAACCACT
AGCAGTACTCCCACACAATCTCATCAGTACTATGATCAGTTCTCCCCAGCACGTGACTTA
AACCTCGAATTCGGTTCTTCGTTTTCTGGCAAGTGGGCAACGGACATCCTTCTAGAAACT
TCCCGAGCCATTGCTGATAAGAACAGCACACGTGTCCAGCAGCTGATGTGGATGTTGAAT
GAGCTAAGTTCTCCCTATGGTGACACCGAGCAAAAATTGGCTTCTTATTTTTTGCAGGCC
TTGTTTAGTCGAATGACGGATTCTGGCGAACGTTGTTATAGAACTTTGGTGTCTGCTTCT
GATAAAACATGTTCGTTCGAGTCAACGAGGAAATTGGTTTTGAAATTCCAGGAAGTTAGC
CCGTGGACAACTTTTGGTCACGTTGCGTCCAATGGTGCAATTATGGAAGCGTTCGAAGGT
GAAAGTAAGTTGCATATAATTGATATTAGCAACACGTATTGTACTCAATGGCCAACTTTG
CTTGAAGCTCTTGCTACTCGTACTGATGAAACTCCTCATCTCCGACTCACCACCGTGGTC
GTAGGTGGCGCCACCGGAGGAACGGCGGCTGTGCAAAAAGTTATGAAAGAGATCGGGAGC
AGAATGGAAAAATTTGCTAGGCTTATGGGTGTGCCATTTAAGTTTAATGTCATACATCAT
ATGGGAAACTTATCTGAATTGGATGTTGGTGCGTTAGATATTAAAGAAGATGAAGCGCTA
GCTATTAATTGTATCGGCGCGTTACATTCGGTTTCACCAGCTGGAAATCGGAGGGATTAT
TTGATATCATTGTTTAGGAGATTACAGCCTAGGATTGTGACTATTGTGGAAGAAGAAGCT
GATCTTGATGTTGGAGTTGATGGTTTTGATTTCGTTAAGGGTTTTCAAGAATGTTTGAGA
TGGATTAGGGTTTATTTTGAATCATTAGACGACAGTTTCCCTAAGACAAGTAACGAACGT
TTGATGCTAGAGAGACAAGCAGGACGGTCTATTGTTGATTTACTGGCTTGCCCTCCATCA
GAGTCAATGGAGAGGCGGGAAACAGGGGCAAAATGGTCACATCGTTTGCATGCAGGAGGG
TTTAGTCCGGTTTTATATAGTGATGAAGTTTGTGATGATGTGAGGGCTTTGTTAAGGAGG
TATAAAGAAGGGTGGTCAATGACACAGTGCGGCGGAGATTCCGCCGGAATATTCCTGTCG
TGGAAGGAACAGCCGGTGGTGTGGGCCAGTGCATGGAAGCCTTAG

Peptide Sequence

PEP ID

XP_016479901.1
PEP Infomation

PREDICTED: protein SHORT-ROOT-like [Nicotiana tabacum]
Sequence

MDTLFRLVNLQQQQQQSDQSFNSSRTSSSSRSSNKQNTYTTYNYPSHHNQEDEECFNFFM
DEDDFSSNSSSKHNNYPPPYHYQHHHQQQQFSNTPTPTTTSSTPTQSHQYYDQFSPARDL
NLEFGSSFSGKWATDILLETSRAIADKNSTRVQQLMWMLNELSSPYGDTEQKLASYFLQA
LFSRMTDSGERCYRTLVSASDKTCSFESTRKLVLKFQEVSPWTTFGHVASNGAIMEAFEG
ESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVVGGATGGTAAVQKVMKEIGS
RMEKFARLMGVPFKFNVIHHMGNLSELDVGALDIKEDEALAINCIGALHSVSPAGNRRDY
LISLFRRLQPRIVTIVEEEADLDVGVDGFDFVKGFQECLRWIRVYFESLDDSFPKTSNER
LMLERQAGRSIVDLLACPPSESMERRETGAKWSHRLHAGGFSPVLYSDEVCDDVRALLRR
YKEGWSMTQCGGDSAGIFLSWKEQPVVWASAWKP

Transcript Sequence

Gene sequence data has not been registered.